Index A | B | C | D | E | F | G | H | I | L | M | P | Q | R | S | T A align_sino_views() (in module mbirjax.preprocess) apply_cylindrical_mask() (in module mbirjax.preprocess) auto_crop_sino_conebeam() (in module mbirjax.preprocess) auto_set_recon_geometry() (mbirjax.TomographyModel method) B back_project() (mbirjax.TomographyModel method) BH_correction() (in module mbirjax.preprocess) C compute_sino_and_params() (in module mbirjax.preprocess.nsi) (in module mbirjax.preprocess.pymbir) (in module mbirjax.preprocess.zeiss_cb) (in module mbirjax.preprocess.zeiss_tct) compute_sino_transmission() (in module mbirjax.preprocess) ConeBeamModel (class in mbirjax) copy_ct_model() (in module mbirjax.utilities) correct_background_offset() (in module mbirjax.preprocess) correct_det_rotation() (in module mbirjax.preprocess) create_hsnt_metadata() (in module mbirjax.hsnt) crop_view_data() (in module mbirjax.preprocess) D dehydrate() (in module mbirjax.hsnt) denoise() (mbirjax.QGGMRFDenoiser method) direct_recon() (mbirjax.TomographyModel method) download_and_extract() (in module mbirjax.utilities) downsample_view_data() (in module mbirjax.preprocess) E export_hsnt_data_hdf5() (in module mbirjax.hsnt) export_recon_hdf5() (in module mbirjax.utilities) F fbp_recon() (mbirjax.MultiAxisParallelModel method) (mbirjax.ParallelBeamModel method) fdk_recon() (mbirjax.ConeBeamModel method) forward_project() (mbirjax.TomographyModel method) G gen_huber_weights() (in module mbirjax.preprocess) gen_modified_3d_sl_phantom() (mbirjax.TomographyModel method) gen_translation_phantom() (in module mbirjax.utilities) gen_weights() (in module mbirjax.vcd_utils) gen_weights_mar() (in module mbirjax.vcd_utils) generate_3d_shepp_logan_low_dynamic_range() (in module mbirjax.utilities) generate_3d_shepp_logan_reference() (in module mbirjax.utilities) generate_demo_data() (in module mbirjax.utilities) generate_hyper_data() (in module mbirjax.hsnt) get_ct_model() (in module mbirjax.utilities) get_magnification() (mbirjax.TomographyModel method) get_opt_views() (in module mbirjax.vcls) get_params() (mbirjax.ParameterHandler method) get_recon_dict() (mbirjax.TomographyModel method) H hyper_denoise() (in module mbirjax.hsnt) I import_hsnt_data_hdf5() (in module mbirjax.hsnt) import_hsnt_list_hdf5() (in module mbirjax.hsnt) import_recon_hdf5() (in module mbirjax.utilities) interpolate_defective_pixels() (in module mbirjax.preprocess) L load_data_hdf5() (in module mbirjax.utilities) load_recon_hdf5() (mbirjax.TomographyModel static method) load_scans_and_params() (in module mbirjax.preprocess.nsi) (in module mbirjax.preprocess.zeiss_cb) (in module mbirjax.preprocess.zeiss_tct) M median_filter3d() (in module mbirjax) multi_threshold_otsu() (in module mbirjax.preprocess) MultiAxisParallelModel (class in mbirjax) P ParallelBeamModel (class in mbirjax) print_params() (mbirjax.ParameterHandler method) prox_map() (mbirjax.TomographyModel method) Q QGGMRFDenoiser (class in mbirjax) R read_tif_img() (in module mbirjax.preprocess) read_tif_stack_dir() (in module mbirjax.preprocess) recon() (mbirjax.TomographyModel method) recon_plastic_metal() (in module mbirjax.preprocess) rehydrate() (in module mbirjax.hsnt) remove_all_stripe() (in module mbirjax.preprocess) remove_sino_offset() (in module mbirjax.preprocess) remove_stripe_fw() (in module mbirjax.preprocess) S save_data_hdf5() (in module mbirjax.utilities) save_recon_hdf5() (mbirjax.TomographyModel method) scale_recon_shape() (mbirjax.TomographyModel method) segment_plastic_metal() (in module mbirjax.preprocess) set_params() (mbirjax.TomographyModel method) show_image_with_projection_rays() (in module mbirjax.vcls) slice_viewer() (in module mbirjax.viewer) split_sino_recon() (mbirjax.ConeBeamModel method) stitch_arrays() (in module mbirjax.utilities) T TomographyModel (class in mbirjax) TranslationModel (class in mbirjax)
